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This
database contains a total of three hundred thousands (300.000)
oligonucleotide sequences in a size range between 16 and 30
bases. For each oligonucleotide length, 20.000 sequences are
available, which are distributed homogeneously in 10 classes
of CG-content percentage. Thus, for each particular length
and CG-content class, a total of 2.000 oligonucleotide sequences
are available. For each oligonucleotide sequence, several
features and properties were extracted and/or calculated,
and stored in this database. The raw data used to build this
database can be downloaded as a raw
text file (38 MB) or as a gzipped
file (7 MB).
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Raw
data table description
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Field |
Description |
num
len
seq
basic
salt
th1
th2
th3
cg
|
sequential
number
oligonucleotide length
oligonucleotide sequence
melting temperature (basic)
melting temperature (salt adjusted)
melting temperature (thermodynamic 1, Breslauer)
melting temperature (thermodynamic 2, SantaLucia)
melting temperature (thermodynamic 3, Sugimoto)
CG-content percentage |
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