This database contains a total of three hundred thousands (300.000) oligonucleotide sequences in a size range between 16 and 30 bases. For each oligonucleotide length, 20.000 sequences are available, which are distributed homogeneously in 10 classes of CG-content percentage. Thus, for each particular length and CG-content class, a total of 2.000 oligonucleotide sequences are available. For each oligonucleotide sequence, several features and properties were extracted and/or calculated, and stored in this database. The raw data used to build this database can be downloaded as a raw text file (38 MB) or as a gzipped file (7 MB).

Raw data table description
Field Description
num
len
seq
basic
salt
th1
th2
th3
cg
sequential number
oligonucleotide length
oligonucleotide sequence
melting temperature (basic)
melting temperature (salt adjusted)
melting temperature (thermodynamic 1, Breslauer)
melting temperature (thermodynamic 2, SantaLucia)
melting temperature (thermodynamic 3, Sugimoto)
CG-content percentage
 
 
dnaMATE