SUPPLEMENTAL MATERIAL FOR

Accurate and unambiguous tag-to-gene mapping in SAGE by a hierarchical gene assignment procedure

Malig, R., Varela, C., Agosin, E. and Melo, F.

TABLE OF CONTENTS
*WWW LINK*	*DESCRIPTION*
Virtual_Yeast_TAGs_HGA_Anno	The HGA-based annotation of all potential virtual genomic SAGE-tags from yeast .
Exp_Var_TAGs_HGA_Anno	The experimental tags from Varela et al. 2005, along with the tag-to-gene assignments performed by the authors and by the HGA method.
Exp_Vel_TAGs_HGA_Anno	The experimental tags from Velculescu et al. 1997, along with the tag-to-gene assignments performed by the authors and by the HGA method.
Exp_Kal_TAGs_HGA_Anno	The experimental tags from Kal et al. 1999, along with the tag-to-gene assignments performed by the authors and by the HGA method.
SGD_Yeast_Anno_ Parsed	Parsed annotation of the yeast genome used in this work.
SGD_Yeast_Anno_ Orig	Original annotation of the yeast genome from the Saccharomyces Genome Database (SGD).
Assigned_3’-UTRs_Yeast	Sequences of the 3’-UTRs assigned in this work from XXX.
SGD_Yeast_Genome	The raw sequence of the yeast genome used in this work. Each chromosome is provided in a different file in FASTA format.
PolyA_Yeast_Genome	Regions with more than 8 consecutive adenines in the yeast genome.
Histo_3’-UTRs_Length	Graph with the length distribution of assigned 3’-UTRs.
Virtual SAGE-tags software	Software tools for the extraction of virtual SAGE-tags from a genome.
Each linked page contain a README text file with the description of its contents