SUPPLEMENTAL MATERIAL FOR

 

Accurate and unambiguous tag-to-gene mapping in SAGE by a hierarchical gene assignment procedure

 

Malig, R., Varela, C., Agosin, E. and Melo, F.

 

 

TABLE OF CONTENTS

WWW LINK

DESCRIPTION

Virtual_Yeast_TAGs_HGA_Anno

The HGA-based annotation of all potential virtual genomic SAGE-tags from yeast .

Exp_Var_TAGs_HGA_Anno

The experimental tags from Varela et al. 2005, along with the tag-to-gene assignments performed by the authors and by the HGA method.

Exp_Vel_TAGs_HGA_Anno

The experimental tags from Velculescu et al. 1997, along with the tag-to-gene assignments performed by the authors and by the HGA method.

Exp_Kal_TAGs_HGA_Anno

The experimental tags from Kal et al. 1999, along with the tag-to-gene assignments performed by the authors and by the HGA method.

SGD_Yeast_Anno_ Parsed

Parsed annotation of the yeast genome used  in  this work.

SGD_Yeast_Anno_ Orig

Original annotation of the yeast genome from the Saccharomyces Genome Database (SGD).

Assigned_3-UTRs_Yeast

Sequences of the 3-UTRs assigned in this work from XXX.

SGD_Yeast_Genome

The raw sequence of the yeast genome used in this work. Each chromosome is provided in a different file in FASTA format.

PolyA_Yeast_Genome

Regions with more than 8 consecutive adenines in the yeast genome.

Histo_3-UTRs_Length

Graph with the length distribution of assigned 3-UTRs.

Virtual SAGE-tags software

Software tools for the extraction of virtual SAGE-tags from a genome.

Each linked page contain a README text file with the description of its contents