To compile this program just run make, this uses the g++ compiler and generates a 
binary named 'formater'.

The formater program receives as parameters in the command line the fasta file to 
be used as input to be formatted.

The output of this program generates 2 files, whose names are:

1.- <Input File Name>.formated: This file has the input fasta formated (lines with
80 nucleotides and everithing in capital letters), and with correlative numbers 
instead of the sequence names (starting from 0).

2.- <Input File Name>.name: This file contains a table, tab-separated, whose first 
column is the correlative number associated to the sequence, then it has the sequence 
name in the input file, and finally it has the sequence length.

The formatted output consists of a series of sequences, each one equivalent to the 
original one, whose names are structurated as follows:

> <Sequence Number>

So, the thirth sequence will be called "> 2" (because the correlative numbers start at 0).

This program is open source, and thus every program based on this should be open source as well.