#SIMILARITY
#
#Version: October, 1999
#
#Modeller 5s
#
#Reference:
#
#Freq.Mat. -> Johnson & Overington, JMB 233, 716-738, 1993
#
#Produced by GAs at /disk7/usr/people/fmelo/C_CODE/PROGRAMS/GAs/ALIGN
#
#Training set:
#
#training_set_19.99ide_2.0rms_100ali_scop.txt
#< 19.99 percentage seq ide
#> 100 aligned res
#< 2.0 A RMSD
#50 alignments
#6714 residues aligned in 15080 alignments
#3 random copies ---> 3 x 6714 = 20142 random aligned residues
#
#Chromosome structure and fitness
#
#Iteration  6  0.2380  0.5810  0.3429  5  AG  C  DEKNPQRST  FILMVWY  H  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  
#
ARNDCEQGHILKMFPSTWYV
130.2 66.4 66.4 66.4 29.1 66.4 66.4 130.2 49.4 41.8 41.8 66.4 41.8 41.8 66.4 66.4 66.4 41.8 41.8 41.8 
66.4 101.8 101.8 101.8  7.9 101.8 101.8 66.4 72.4 37.9 37.9 101.8 37.9 37.9 101.8 101.8 101.8 37.9 37.9 37.9 
66.4 101.8 101.8 101.8  7.9 101.8 101.8 66.4 72.4 37.9 37.9 101.8 37.9 37.9 101.8 101.8 101.8 37.9 37.9 37.9 
66.4 101.8 101.8 101.8  7.9 101.8 101.8 66.4 72.4 37.9 37.9 101.8 37.9 37.9 101.8 101.8 101.8 37.9 37.9 37.9 
29.1  7.9  7.9  7.9 242.1  7.9  7.9 29.1  0.0 17.8 17.8  7.9 17.8 17.8  7.9  7.9  7.9 17.8 17.8 17.8 
66.4 101.8 101.8 101.8  7.9 101.8 101.8 66.4 72.4 37.9 37.9 101.8 37.9 37.9 101.8 101.8 101.8 37.9 37.9 37.9 
66.4 101.8 101.8 101.8  7.9 101.8 101.8 66.4 72.4 37.9 37.9 101.8 37.9 37.9 101.8 101.8 101.8 37.9 37.9 37.9 
130.2 66.4 66.4 66.4 29.1 66.4 66.4 130.2 49.4 41.8 41.8 66.4 41.8 41.8 66.4 66.4 66.4 41.8 41.8 41.8 
49.4 72.4 72.4 72.4  0.0 72.4 72.4 49.4 208.5 50.5 50.5 72.4 50.5 50.5 72.4 72.4 72.4 50.5 50.5 50.5 
41.8 38.0 38.0 38.0 17.8 38.0 38.0 41.8 50.5 118.7 118.7 38.0 118.7 118.7 38.0 38.0 38.0 118.7 118.7 118.7 
41.8 38.0 38.0 38.0 17.8 38.0 38.0 41.8 50.5 118.7 118.7 38.0 118.7 118.7 38.0 38.0 38.0 118.7 118.7 118.7 
66.4 101.8 101.8 101.8  7.9 101.8 101.8 66.4 72.4 37.9 37.9 101.8 37.9 37.9 101.8 101.8 101.8 37.9 37.9 37.9 
41.8 38.0 38.0 38.0 17.8 38.0 38.0 41.8 50.5 118.7 118.7 38.0 118.7 118.7 38.0 38.0 38.0 118.7 118.7 118.7 
41.8 38.0 38.0 38.0 17.8 38.0 38.0 41.8 50.5 118.7 118.7 38.0 118.7 118.7 38.0 38.0 38.0 118.7 118.7 118.7 
66.4 101.8 101.8 101.8  7.9 101.8 101.8 66.4 72.4 37.9 37.9 101.8 37.9 37.9 101.8 101.8 101.8 37.9 37.9 37.9 
66.4 101.8 101.8 101.8  7.9 101.8 101.8 66.4 72.4 37.9 37.9 101.8 37.9 37.9 101.8 101.8 101.8 37.9 37.9 37.9 
66.4 101.8 101.8 101.8  7.9 101.8 101.8 66.4 72.4 37.9 37.9 101.8 37.9 37.9 101.8 101.8 101.8 37.9 37.9 37.9 
41.8 38.0 38.0 38.0 17.8 38.0 38.0 41.8 50.5 118.7 118.7 38.0 118.7 118.7 38.0 38.0 38.0 118.7 118.7 118.7 
41.8 38.0 38.0 38.0 17.8 38.0 38.0 41.8 50.5 118.7 118.7 38.0 118.7 118.7 38.0 38.0 38.0 118.7 118.7 118.7 
41.8 38.0 38.0 38.0 17.8 38.0 38.0 41.8 50.5 118.7 118.7 38.0 118.7 118.7 38.0 38.0 38.0 118.7 118.7 118.7