REDUCED PROTEIN ALPHABETS: SUPPLEMENTAL MATERIAL ON STATISTICAL POTENTIALS

Statistical Potentials

Description Energy Frequency Structure
Standard potential (20 amino acid types) JO20.de.gz (gzipped) JO20.out.gz (gzipped) JO20.str (text)
Reduced WW5 potential (5 amino acid types: Wang and Wang) WW5.de.gz (gzipped) WW5.out.gz (gzipped) WW5.str (text)
Reduced SR5 potential (5 amino acid types: Solis and Rackovsky) SR5.de.gz (gzipped) SR5.out.gz (gzipped) SR5.str (text)
Reduced MU4 potential (4 amino acid types: Murphy et al.) MU4.de.gz (gzipped) MU4.out.gz (gzipped) MU4.str (text)
Reduced MM5 potential (5 amino acid types: Melo and Marti-Renom) MM5.de.gz (gzipped) MM5.out.gz (gzipped) MM5.str (text)
Random potentials (5 amino acid types: Random grouping) FTP files (gzipped) --- RD5.str (text)