| Superposition of two proteins chains and the structural alignment obtained with STOVCA are presented. Protein backbones are shown in blue and green colors. Equivalent carbons determined by STOVCA software are highlighted in red for the blue chain and orange for the green chain. The bottom of the panel contains SO, Relative Similarity and Sequence Identity values reported by STOVCA for the current structural alignment. The bottom of the page shows the structural alignment for the current pair using the same color scheme detailed above. |
| OPTIMAL SUPERPOSITION |
|---|
| STRUCTURAL ALIGNMENT |
1dbha AIKKNEIQKNIDGWEGKDIGQCCNEFI----EGTLTRVGAK-HERHIFLFDGL----------ICCKSNHGQPRLPGASN
1qqga ---------------------------DVRKVGYLRKPKS-MHKRFFVLRA--ASEAGGPARLEYYEN------------
1dbha AEYR----------LKEKFFRK-----VQINDKDDT--NEYKHAFEIILKDENSVIFSAKSAEEKNNW-AALISLQYRST
1qqga ----EKKWRHKSSAPKRSIP--LESCFNINKR----ADSKNKHLVALYT-RDEHFAIAADSEAEQDSWYQALLQLH----
1dbha L
1qqga -
|
| CALCULATED DATA |
70 S (absolute similarity or structural alignment length) 68.0 SO (structural overlap) 60.6 s (relative similarity) 1.38 RMSD (of equivalent positions, in Angstroms) 21.4 SeqIde (sequence identity of equivalent positions) 54.7 Cq (relative query cover) 68.0 Ct (relative target cover) 128 Lq (query structure length) 103 Lt (target structure length) 103 min(Lq,Lt) (length of the shortest structure) |
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