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Genome Explore
Search Potential TAGs in a Genome
This item allows to extract the potential SAGE TAGs from the entire or regions of a genome.
Step 1
Organism
Select
Saccharomyces cerevisiae
Step 2
Anchoring-Tagging Enzyme Pair
Select
NlaIII - BsmFI
Step 3
Odds ratio for confidence class assignments
5
Step 4
TAG categories and genomic mapping contexts to display:
TAG Class
Genomic Type
TAG Confidence
TAG Location
Internal Poly-A next ?
Platinum
Gold
Silver
Aluminum
Copper
Iron
Silicon
All
Known Protein
Hypothetical Protein
rRNA
snoRNA
snRNA
smRNA
tRNA
Intergenic A
Intergenic B
Intergenic C
High
Low
Undefined
ORF
3'UTR
5'UTR
Exon
Intron
Yes
No
Step 5
Explore SAGE TAGs in the genome by:
Gene Name
Genome Fragment
Chromosome
Full Genome
Step 6
Input Data
Upload text file
OR Fill in
Gene name
list
Output Display Options
Show
50
100
500
1000
2000
5000
Sort by
Confidence
Sequence
Class
Location
Internal Poly-A next
Chromosome
Strand
Coordinates
Standard Gene Name
Systematic Gene Name
Odds ratio
Score Class
Ocurrence Frequency
Descending
Ascending
Pontificia Universidad Católica de Chile
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MBL
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