Supplementary Data

Benchmark sets

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Benchmark of MOMA versus other tools (SHEBA, YAKUSA, QP tableau search, GANGSTA+, Structal and TopMatch)

Calibration Sets

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HOMSTRAD set used to calibrate MOMA

Databases

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Astral SCOPe 2.03 40% sequence identity
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Astral SCOPe 2.03 95% sequence identity
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PDB database from july 2013

ROC Analysis

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Analysis using ROC curves to compare the performance of MOMA versus other tools (SHEBA, YAKUSA, QP tableau search, GANGSTA+, Structal, TopMatch, TM-align and FATCAT)