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The current version of the database contains 922 entries, which is available for download below. Additionally, the three subsets containing the major functional classes have been built and are also available. The raw data includes the corresponding PDB files, the effective atomic interfaces (in PDB format), the relevant protein and DNA features, along with other useful detailed data calculated from the effective interfaces.

Current database release: 26-Apr-2010

Data Protein-DNA Features PDB Files PDB Interfaces Interface Data
PDIdb:
Complete database (922 entries)
508K
56.8M
4.7M
5.4M
Enzymes:
(528 entries)
320K
36.8M
2.8M
3.3M
Transcription Factors:
(295 entries)
127K
12.5M
1.2M
1.4M
Structural/DNA Binding Proteins:
(99 entries)
61.4K
7.4M
644K
765K
Clustering Group Representatives
Sequence:
(267 groups, 248 entries)
133K
14.9M
1.3M
1.5M
Interface:
(671 groups, 671 entries)
367K
40.4M
3.2M
3.7M
Interface Clustering tree (Postscript 27.5K)